Publications

TITLE YEAR
Estimating the magnitude and sensitivity of energy fluxes for stickleback hosts and Schistocephalus solidus parasites using the metabolic theory of ecology

DC Claar, SM Faiad, NC Mastick, RL Welicky, MA Williams, KT Sasser, …
Ecology and Evolution 13 (12), e10755
2023
The helminth, Schistocephalus solidus, modulates threespine stickleback (Gasterosteus aculeatus) splenic melanomacrophage centers and B cells

A Collias, S Vaidyanathan, A Cary, J Weber, D Bolnick, N Steinel
Developmental & Comparative Immunology 148, 105007
2023
Evolution of horn length and lifting strength in the Japanese rhinoceros beetle Trypoxylus dichotomus

JN Weber, W Kojima, RP Boisseau, T Niimi, S Morita, S Shigenobu, …
Current Biology 33 (20), 4285-4297. e5
2023
The draft genome sequence of the Japanese rhinoceros beetle Trypoxylus dichotomuseptentrionalis towards an understanding of horn formation

S Morita, TF Shibata, T Nishiyama, Y Kobayashi, K Yamaguchi, K Toga, …
Scientific Reports 13 (1), 8735
2023
A call for more ecologically and evolutionarily relevant studies of immune costs

KT Sasser, JN Weber
Evolutionary Ecology 37 (1), 203-214
2 2023
Evolutionary gain and loss of a pathological immune response to parasitism

JN Weber, NC Steinel, F Peng, KC Shim, BK Lohman, LE Fuess, …
Science 377 (6611), 1206-1211
12 2022
Interspecific variation in cooperative burrowing behavior by Peromyscus mice

NL Bedford, JN Weber, W Tong, F Baier, A Kam, RA Greenberg, …
Evolution Letters 6 (4), 330-340
3 2022
Evidence of divergent selection in a parasite due to its host immunological respond

KC Shim, JN Weber, S den Haan, DI Bolnick
bioRxiv, 2022.05. 15.492026
2 2022
Population genomics of a threespine stickleback tapeworm in Vancouver Island

KC Shim, JN Weber, CA Hernandez, DI Bolnick
bioRxiv, 2022.05. 15.491937
3 2022
Contribution of PU. 1 and STAT6 to fibrosis-mediated growth suppression of the Diphyllobothriidae family cestode, Schistocephalus solidus.

NC Steinel, J Weber, F Peng, KC Shim, B Lohman, L Fuess, S De Lise, …
The Journal of Immunology 208 (1_Supplement), 170.14-170.14
2022
The draft genome sequence of Japanese rhinoceros beetle Trypoxylus dichotomus

S Morita, TF Shibata, T Nishiyama, Y Kobayashi, K Yamaguchi, K Toga, …
bioRxiv, 2022.01. 10.475740
2 2022
Between‐population differences in constitutive and infection‐induced gene expression in threespine stickleback

LE Fuess, JN Weber, S den Haan, NC Steinel, KC Shim, DI Bolnick
Molecular ecology 30 (24), 6791-6805
15 2021
Evolution of a costly immunity to cestode parasites is a pyrrhic victory

JN Weber, NC Steinel, F Peng, KC Shim, BK Lohman, L Fuess, S de Lisle, …
bioRxiv, 2021.08. 04.455160
8 2021
Immune gene expression covaries with gut microbiome composition in stickleback

LE Fuess, S den Haan, F Ling, JN Weber, NC Steinel, DI Bolnick
MBio 12 (3), 10.1128/mbio. 00145-21
16 2021
March Mammal Madness and the power of narrative in science outreach

K Hinde, CEG Amorim, AF Brokaw, N Burt, MC Casillas, A Chen, …
Elife 10, e65066
5 2021
A test of the Baldwin Effect: Differences in both constitutive expression and inducible responses to parasites underlie variation in host response to a parasite

L Fuess, JN Weber, S den Haan, NC Steinel, KC Shim, DI Bolnick
BioRxiv, 2020.07. 29.216531
14 2020
Gut microbial composition and expression of host immune-related genes are tightly linked in the model teleost system, Gasterosteus aculeatus (three-spined stickleback)

LE Fuess, F Ling, NC Steinel, J Weber, DI Bolnick
The Journal of Immunology 204 (1_Supplement), 231.1-231.1
2020
The gut microbiota response to helminth infection depends on host sex and genotype

F Ling, N Steinel, J Weber, L Ma, C Smith, D Correa, B Zhu, D Bolnick, …
The ISME journal 14 (5), 1141-1153
31 2020
Transcriptomic analyses of Gasterosteus aculeatus parasite response reveal mechanisms of resistance

LE Fuess, JN Weber, NC Steinel, HS Den, D Bolnick
INTEGRATIVE AND COMPARATIVE BIOLOGY 60, E77-E77
2020
Behavioural mechanisms underlying the evolution of cooperative burrowing in Peromyscus mice

NL Bedford, JN Weber, W Tong, F Baier, A Kam, RA Greenberg, …
bioRxiv, 731984
3 2019
Landscape genomics of an obligate mutualism: Concordant and discordant population structures between the leafcutter ant Atta texana and its two main fungal …

CC Smith, JN Weber, AS Mikheyev, F Roces, M Bollazzi, K Kellner, …
Molecular Ecology 28 (11), 2831-2845
19 2019
Jumping gene gave fish a freshwater start

JN Weber, W Tong
Science 364 (6443), 831-832
1 2019
Host sex and genotype modify the gut microbiome response to helminth infection

F Ling, N Steinel, J Weber, L Ma, C Smith, D Correa, B Zhu, D Bolnick, …
bioRxiv, 608638
2019
Isolation by instability: Historical climate change shapes population structure and genomic divergence of treefrogs in the Neotropical Cerrado savanna

MM Vasconcellos, GR Colli, JN Weber, EM Ortiz, MT Rodrigues, …
Molecular Ecology 28 (7), 1748-1764
44 2019
Landscape genomics of an obligate mutualism: discordant population structures between a leafcutter-ant and its fungal cultivars

CC Smith, JN Weber, AS Mikheyev, F Roces, M Bollazzi, K Kellner, …
bioRxiv, 458950
1 2018
Partitioning the effects of isolation by distance, environment, and physical barriers on genomic divergence between parapatric threespine stickleback (vol 71, pg 342, 2017)

JN Weber, GS Bradburd, YE Stuart, WE Stutz, DI Bolnick
EVOLUTION 72 (8), 1736-1736
2018
Partitioning the effects of isolation by distance, environment, and physical barriers on genomic divergence between parapatric threespine stickleback

JN Weber, GS Bradburd, YE Stuart, WE Stutz, DI Bolnick
Evolution 72 (8), 1736-1736
1 2018
What makes beetles extra horny? Genomics of weapons size variation in Japanese rhino beetles

JN Weber, H Gotoh, W Kojima, K Araya, CP Lin, LC Lavine, D Emlen
Entomology 2017
2017
Recent evolution of extreme cestode growth suppression by a vertebrate host

JN Weber, NC Steinel, KC Shim, DI Bolnick
Proceedings of the National Academy of Sciences 114 (25), 6575-6580
51 2017
Contrasting effects of environment and genetics generate a continuum of parallel evolution

YE Stuart, T Veen, JN Weber, D Hanson, M Ravinet, BK Lohman, …
Nature ecology & evolution 1 (6), 0158
214 2017
Partitioning the effects of isolation by distance, environment, and physical barriers on genomic divergence between parapatric threespine stickleback

JN Weber, GS Bradburd, YE Stuart, WE Stutz, DI Bolnick
Evolution 71 (2), 342-356
36 2017
The role of gene expression in the recent evolution of resistance in a model host parasite system

BK Lohman, N Steinel, JN Weber, DI Bolnick
bioRxiv, 102301
2 2017
Gene expression contributes to the recent evolution of host resistance in a model host parasite system

BK Lohman, NC Steinel, JN Weber, DI Bolnick
Frontiers in immunology, 1071
36 2017
Resist globally, infect locally: a transcontinental test of adaptation by stickleback and their tapeworm parasite

JN Weber, M Kalbe, KC Shim, NI Erin, NC Steinel, L Ma, DI Bolnick
The American Naturalist 189 (1), 43-57
68 2017
Evaluation of TagSeq, a reliable low‐cost alternative for RNA seq

BK Lohman, JN Weber, DI Bolnick
Molecular ecology resources 16 (6), 1315-1321
160 2016
Inside the Audience Studio (vol 311, pg 30, 2014)

JN Weber, HE Hoekstra
SCIENTIFIC AMERICAN 312 (3), 5-5
2015
Demystifying the RAD fad

JB Puritz, MV Matz, RJ Toonen, JN Weber, DI Bolnick, CE Bird
Molecular ecology 23 (24), 5937-5942
276 2014
Loss of schooling behavior in cavefish through sight-dependent and sight-independent mechanisms

JE Kowalko, N Rohner, SB Rompani, BK Peterson, TA Linden, …
Current Biology 23 (19), 1874-1883
163 2013
Discrete genetic modules are responsible for complex burrow evolution in Peromyscus mice

JN Weber, BK Peterson, HE Hoekstra
Nature 493 (7432), 402-405
246 2013
Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

BK Peterson, JN Weber, EH Kay, HS Fisher, HE Hoekstra
PloS one 7 (5), e37135
3350 2012
Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and

BK Peterson, JN Weber, EH Kay, HS Fisher, HE Hoekstra
2012
Double digest RADseq: an inexpensive method for de novo SNP discovery andgenotypinginmodelandnon-modelspecies

BK Peterson, JN Weber, EH Kay, HS Fisher, HE Hoekstra
PLoSOne7: e37135
3 2012
Evolution, genetics and ecology of burrowing behavior in deer mice (genus Peromyscus)

JN Weber
Harvard University
2012
Five hundred microsatellite loci for Peromyscus

JN Weber, MB Peters, OV Tsyusko, CR Linnen, C Hagen, NA Schable, …
Conservation Genetics 11, 1243-1246
20 2010
The evolution of burrowing behaviour in deer mice (genus Peromyscus)

JN Weber, HE Hoekstra
Animal Behaviour 77 (3), 603-609
76 2009
Correction: adaptive variation in beach mice produced by two interacting pigmentation genes

CC Steiner, JN Weber, HE Hoekstra
PLoS Biology 6 (2), e36
6 2008
Correction: Adaptive Variation in Beach Mice Produced by Two

CC Steiner, JN Weber, HE Hoekstra
2008
Adaptive variation in beach mice produced by two interacting pigmentation genes

CC Steiner, JN Weber, HE Hoekstra
PLoS biology 5 (9), e219
388 2007
Myocyte enhancer factor-2 and serum response factor binding elements regulate fast Myosin heavy chain transcription in vivo

DL Allen, JN Weber, LK Sycuro, LA Leinwand
Journal of Biological Chemistry 280 (17), 17126-17134
63 2005
Muscle-and fiber-specific regulation of the myosin heavy chain genes

DL Allen, JN Weber, L Sycuro, LA Leinwand
FASEB JOURNAL 19 (4), A117-A117
2005
Double digest RADseq: an inexpensive method for de novo

BK Peterson, JN Weber, EH Kay, HS Fisher, HE Hoekstra
SNP discovery and genotyping in model and non-model species
1
Supplemental Information Loss of Schooling Behavior in Cavefish through Sight-Dependent and Sight-Independent Mechanisms

JE Kowalko, N Rohner, SB Rompani, BK Peterson, TA Linden, …